The original S57 map consists of the following layers:
ogrinfo E:\temp\ENC_ROOT\US4CA11M\US4CA11M.000
INFO: Open of `E:\temp\ENC_ROOT\US4CA11M\US4CA11M.000'
using driver `S57' successful.
1: DSID (None)
2: Point (Point)
3: Line (Line String)
4: Area (Polygon)
5: Meta (None)
So I was able to convert each layer separately one by one without errors:
ogr2ogr -f GeoJSON US1HA02M-Area.json E:\temp\ENC_ROOT\US1HA02M\US1HA02M.000 Area -lco RFC7946=YES -skipfailures ogr2ogr -f GeoJSON US1HA02M-Point.json E:\temp\ENC_ROOT\US1HA02M\US1HA02M.000 Point -lco RFC7946=YES -skipfailures ogr2ogr -f GeoJSON US1HA02M-Line.json E:\temp\ENC_ROOT\US1HA02M\US1HA02M.000 Line -lco RFC7946=YES -skipfailures ogr2ogr -f GeoJSON US1HA02M-DSID.json E:\temp\ENC_ROOT\US1HA02M\US1HA02M.000 DSID -lco RFC7946=YES -skipfailures Warning 1: No SRS set on layer. Assuming it is long/lat on WGS84 ellipsoid ogr2ogr -f GeoJSON US1HA02M-Meta.json E:\temp\ENC_ROOT\US1HA02M\US1HA02M.000 Meta -lco RFC7946=YES -skipfailures Warning 1: No SRS set on layer. Assuming it is long/lat on WGS84 ellipsoid